Specifically that at some point they became the solution to distributing software, because everything else sucks so bad. It just seems like it's a huge failure that we ship nearly an entire user space environment just to make apps work reliably. And it's really only a Linux problem... Speaking specifically to the distribution component.
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Maybe if we had "modular" containers that were able to have individual modules, but at that point it could be on the rootfs.
I am mostly thinking from a server app perspective though. Otherwise, I agree.