@The Beave in an lxc there is no port to publish, so the systemd unit is a likelier culprit than a second .env. run systemctl cat on the unit and look for EnvironmentFile or inline Environment lines, because those override anything sitting in the app directory. systemctl show <unit> -p Environment tells you what the process was actually handed, and cat /proc/<pid>/environ confirms it on the running process.
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I honestly don't know how to do that. I don't know what you are referring to with "unit." ๐