That's what HORNET Storage Scionic Merkle DAGs are for.
I'm building the first relay that will use it btw, we are aiming to complete it in 4-5 months (that's our milestone target and funding limit).
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just forgot my second point: compact, addressable merkle trees let you guarantee full set membership discovery, assuming that the user didn't post them to a relay not known by the one trying to find it. But it can know the ID, and it can know the set of a given batch of them that have been bundled into a tree.
also, yes, i have read the negentropy documents, and i have been working with strfry. why in the lord's name did they build it using perl and c++? It's not 1998 lol.